Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,100 ERROR [edu.harvard.i2b2.ontology.dao.ConceptDao] (Thread-4990) Incorrect result size: expected 1, actual 0 Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,104 ERROR [edu.harvard.i2b2.crc.dao.CRCDAO] (Thread-4980) QueryResultPatientSetGenerator.generateResult:null: java.lang.NullPointerException at edu.harvard.i2b2.crc.dao.setfinder.QueryResultGenerator.generateResult(QueryResultGenerator.java:130) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.runGenerator(QueryExecutorHelperDao.java:785) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.callResultGenerator(QueryExecutorHelperDao.java:701) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.executeQuery(QueryExecutorHelperDao.java:377) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorDao.executeSQL(QueryExecutorDao.java:320) [CRC-core.jar:] at edu.harvard.i2b2.crc.ejb.ExecRunnable.processQueryRequest(ExecRunnable.java:469) [CRC-core.jar:] at edu.harvard.i2b2.crc.ejb.ExecRunnable.run(ExecRunnable.java:184) [CRC-core.jar:] at java.lang.Thread.ru Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,109 ERROR [edu.harvard.i2b2.crc.dao.CRCDAO] (Thread-4980) Error executing QueryResultPatientSetGenerator.generateResult:null: edu.harvard.i2b2.common.exception.I2B2DAOException: QueryResultPatientSetGenerator.generateResult:null at edu.harvard.i2b2.crc.dao.setfinder.QueryResultGenerator.generateResult(QueryResultGenerator.java:265) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.runGenerator(QueryExecutorHelperDao.java:785) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.callResultGenerator(QueryExecutorHelperDao.java:701) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.executeQuery(QueryExecutorHelperDao.java:377) [CRC-core.jar:] at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorDao.executeSQL(QueryExecutorDao.java:320) [CRC-core.jar:] at edu.harvard.i2b2.crc.ejb.ExecRunnable.processQueryRequest(ExecRunnable.java:469) [CRC-core.jar:] at edu.harvard.i2b2 Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,118 ERROR [edu.harvard.i2b2.crc.ejb.ExecRunnable] (Thread-4980) Got an excpetion in ExecRunnable (RUN): Error executing QueryResultPatientSetGenerator.generateResult:null Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,119 ERROR [stderr] (Thread-4980) edu.harvard.i2b2.common.exception.I2B2DAOException: Error executing QueryResultPatientSetGenerator.generateResult:null Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,120 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.executeQuery(QueryExecutorHelperDao.java:483) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,121 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorDao.executeSQL(QueryExecutorDao.java:320) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,122 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.ejb.ExecRunnable.processQueryRequest(ExecRunnable.java:469) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,124 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.ejb.ExecRunnable.run(ExecRunnable.java:184) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,124 ERROR [stderr] (Thread-4980) at java.lang.Thread.run(Thread.java:744) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,125 ERROR [stderr] (Thread-4980) Caused by: edu.harvard.i2b2.common.exception.I2B2DAOException: QueryResultPatientSetGenerator.generateResult:null Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,126 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.dao.setfinder.QueryResultGenerator.generateResult(QueryResultGenerator.java:265) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,127 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.runGenerator(QueryExecutorHelperDao.java:785) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,127 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.callResultGenerator(QueryExecutorHelperDao.java:701) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,128 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.dao.setfinder.QueryExecutorHelperDao.executeQuery(QueryExecutorHelperDao.java:377) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,129 ERROR [stderr] (Thread-4980) ... 4 more Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,130 ERROR [stderr] (Thread-4980) Caused by: java.lang.NullPointerException Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,130 ERROR [stderr] (Thread-4980) at edu.harvard.i2b2.crc.dao.setfinder.QueryResultGenerator.generateResult(QueryResultGenerator.java:130) Aug 1 15:15:55 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:15:55,131 ERROR [stderr] (Thread-4980) ... 7 more Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,434 ERROR [stderr] (http--0.0.0.0-8080-43) org.springframework.jdbc.BadSqlGrammarException: PreparedStatementCallback; bad SQL grammar [update i2b2demodata.qt_query_master set delete_flag =?,delete_date=? where query_master_id = ? and delete_flag = ?]; nested exception is org.postgresql.util.PSQLException: ERROR: operator does not exist: integer = character varying Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,436 ERROR [stderr] (http--0.0.0.0-8080-43) Hint: No operator matches the given name and argument type(s). You might need to add explicit type casts. Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,437 ERROR [stderr] (http--0.0.0.0-8080-43) Position: 94 Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,438 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.support.SQLStateSQLExceptionTranslator.doTranslate(SQLStateSQLExceptionTranslator.java:97) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,438 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:72) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,439 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:80) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,440 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:80) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,441 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:607) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,442 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:792) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,443 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:850) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,443 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:858) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,444 ERROR [stderr] (http--0.0.0.0-8080-43) at edu.harvard.i2b2.crc.dao.setfinder.QueryMasterSpringDao.deleteQuery(QueryMasterSpringDao.java:531) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,445 ERROR [stderr] (http--0.0.0.0-8080-43) at edu.harvard.i2b2.crc.ejb.QueryInfoBean.deleteQueryMaster(QueryInfoBean.java:255) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,446 ERROR [stderr] (http--0.0.0.0-8080-43) at edu.harvard.i2b2.crc.delegate.setfinder.DeleteQueryMasterHandler.execute(DeleteQueryMasterHandler.java:73) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,447 ERROR [stderr] (http--0.0.0.0-8080-43) at edu.harvard.i2b2.crc.delegate.setfinder.QueryRequestDelegate.handleRequest(QueryRequestDelegate.java:323) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,447 ERROR [stderr] (http--0.0.0.0-8080-43) at edu.harvard.i2b2.crc.axis2.QueryService.handleRequest(QueryService.java:213) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,448 ERROR [stderr] (http--0.0.0.0-8080-43) at edu.harvard.i2b2.crc.axis2.QueryService.request(QueryService.java:75) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,449 ERROR [stderr] (http--0.0.0.0-8080-43) at sun.reflect.GeneratedMethodAccessor19.invoke(Unknown Source) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,450 ERROR [stderr] (http--0.0.0.0-8080-43) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,450 ERROR [stderr] (http--0.0.0.0-8080-43) at java.lang.reflect.Method.invoke(Method.java:606) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,451 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.axis2.receivers.RawXMLINOutMessageReceiver.invokeBusinessLogic(RawXMLINOutMessageReceiver.java:97) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,452 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.axis2.receivers.AbstractInOutSyncMessageReceiver.invokeBusinessLogic(AbstractInOutSyncMessageReceiver.java:42) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,453 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.axis2.receivers.AbstractMessageReceiver.receive(AbstractMessageReceiver.java:114) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,454 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.axis2.engine.AxisEngine.receive(AxisEngine.java:181) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,454 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.axis2.transport.http.HTTPTransportUtils.processHTTPPostRequest(HTTPTransportUtils.java:172) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,455 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.axis2.transport.http.AxisServlet.doPost(AxisServlet.java:146) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,456 ERROR [stderr] (http--0.0.0.0-8080-43) at javax.servlet.http.HttpServlet.service(HttpServlet.java:754) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,457 ERROR [stderr] (http--0.0.0.0-8080-43) at javax.servlet.http.HttpServlet.service(HttpServlet.java:847) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,458 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:329) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,458 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:248) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,459 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:275) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,460 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,460 ERROR [stderr] (http--0.0.0.0-8080-43) at org.jboss.as.web.security.SecurityContextAssociationValve.invoke(SecurityContextAssociationValve.java:153) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,461 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:155) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,462 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,463 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,463 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:368) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,464 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:877) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,465 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:671) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,465 ERROR [stderr] (http--0.0.0.0-8080-43) at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:930) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,466 ERROR [stderr] (http--0.0.0.0-8080-43) at java.lang.Thread.run(Thread.java:744) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,467 ERROR [stderr] (http--0.0.0.0-8080-43) Caused by: org.postgresql.util.PSQLException: ERROR: operator does not exist: integer = character varying Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,468 ERROR [stderr] (http--0.0.0.0-8080-43) Hint: No operator matches the given name and argument type(s). You might need to add explicit type casts. Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,468 ERROR [stderr] (http--0.0.0.0-8080-43) Position: 94 Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,469 ERROR [stderr] (http--0.0.0.0-8080-43) at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2157) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,470 ERROR [stderr] (http--0.0.0.0-8080-43) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1886) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,471 ERROR [stderr] (http--0.0.0.0-8080-43) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:255) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,471 ERROR [stderr] (http--0.0.0.0-8080-43) at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:555) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,472 ERROR [stderr] (http--0.0.0.0-8080-43) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:417) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,473 ERROR [stderr] (http--0.0.0.0-8080-43) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeUpdate(AbstractJdbc2Statement.java:363) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,473 ERROR [stderr] (http--0.0.0.0-8080-43) at org.jboss.jca.adapters.jdbc.WrappedPreparedStatement.executeUpdate(WrappedPreparedStatement.java:493) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,474 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.core.JdbcTemplate$2.doInPreparedStatement(JdbcTemplate.java:798) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,475 ERROR [stderr] (http--0.0.0.0-8080-43) at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:591) Aug 1 15:16:00 jbspnnm1.cbmi.wucon.wustl.edu jboss-as7[29575]: ERR 15:16:00,476 ERROR [stderr] (http--0.0.0.0-8080-43) ... 33 more