A command line integration tool has been developed that integrates a source ontology into the hierarchy of a target ontology as dictated by the mappings between the two.
This feature has been absorbed into the Mapping tool.
NCBO_Integration_Overview Overview of the integration tool
NCBO_Integration_Users_Guide_1-0 Users guide for version 1.0 of integration tool
Integration tool 1.0 package Software package for version 1.0 of the NCBO integration tool