The data installation chapter outlines the process of installing the i2b2 data that is specific to the i2b2 on OMOP project. This process involves creating tables, procedures, views as well as loading data into the tables. The i2b2 data being loaded is based off the CMS SynPUF 1k sample data that is provided by OMOP.
In this chapter we will be using the scripts provided in the data package to create tables and load them with sample data.
The data in this package provides data for a domain of i2b2demo and a project of Demo. The assumption is that the PM Service will be configured as such when installing the PM Cell.
Before moving forward with the installation of the i2b2 on OMOP tables the following requirements must be met.
The OHDSI maintains the CDM tables, for additional information on setting up these tables, please see the OMOP CDM page.
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TO DO: FINISH THIS NOTE
<div class="i2b2-panel"> <table class="i2b2-note"> <colgroup> <col width="24"> <col> </colgroup> <tbody> <tr> <td> <img src="https://community.i2b2.org/wiki/download/attachments/14091764/icon_note.png" width="16" height="16" align="absmiddle" alt="info" border="0"> </td> <td> <b>Note</b> <br>In your i2b2 database you may or may not have installed the crcdata and metadata tables that are provided in the standard i2b2 data package. If you have installed them you will need to delete them </td> </tr> </tbody> </table> </div> |
It is important the tables, procedures, and views are installed in the order defined below. Failure to do so will result in errors when running the scripts.